{
  "id": "lib-process:bioinformatics--pipeline-validation",
  "_kind": "LibraryProcess",
  "_file": "generated-library/processes.yaml",
  "_cluster": "generated-library",
  "attributes": {
    "displayName": "pipeline-validation",
    "description": "Analysis Pipeline Validation - Systematic validation of bioinformatics pipelines for accuracy,\nreproducibility, and clinical use including benchmark testing and performance characterization.",
    "libraryPath": "library/specializations/domains/science/bioinformatics/pipeline-validation.js",
    "specialization": "bioinformatics",
    "references": [
      "- GA4GH Benchmarking: https://github.com/ga4gh/benchmarking-tools\n- Genome in a Bottle: https://www.nist.gov/programs-projects/genome-bottle\n- precisionFDA: https://precision.fda.gov/\n- CAP/CLIA Guidelines: https://www.cap.org/"
    ],
    "example": "const result = await orchestrate('specializations/domains/science/bioinformatics/pipeline-validation', {\n  projectName: 'WGS Pipeline Validation',\n  pipeline: { name: 'WGS-v2', config: '/pipelines/wgs.config' },\n  referenceData: { type: 'GIAB', sample: 'HG002' },\n  validationType: 'clinical'\n});",
    "usesAgents": [
      "general-purpose"
    ]
  },
  "outgoingEdges": [
    {
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      "to": "skill-area:data-analysis",
      "kind": "lib_requires_skill_area",
      "attributes": {
        "weight": 1
      }
    },
    {
      "from": "lib-process:bioinformatics--pipeline-validation",
      "to": "skill-area:statistical-analysis",
      "kind": "lib_requires_skill_area",
      "attributes": {
        "weight": 0.7
      }
    },
    {
      "from": "lib-process:bioinformatics--pipeline-validation",
      "to": "skill-area:python-data-pipelines",
      "kind": "lib_requires_skill_area",
      "attributes": {
        "weight": 0.5
      }
    },
    {
      "from": "lib-process:bioinformatics--pipeline-validation",
      "to": "domain:bioinformatics",
      "kind": "lib_applies_to_domain",
      "attributes": {
        "weight": 1
      }
    },
    {
      "from": "lib-process:bioinformatics--pipeline-validation",
      "to": "role:research-engineer",
      "kind": "lib_involves_role",
      "attributes": {
        "weight": 1
      }
    },
    {
      "from": "lib-process:bioinformatics--pipeline-validation",
      "to": "role:biomedical-engineer",
      "kind": "lib_involves_role",
      "attributes": {
        "weight": 0.7
      }
    },
    {
      "from": "lib-process:bioinformatics--pipeline-validation",
      "to": "workflow:experiment-design",
      "kind": "lib_implements_workflow",
      "attributes": {
        "weight": 1
      }
    },
    {
      "from": "lib-process:bioinformatics--pipeline-validation",
      "to": "specialization:biomedical-informatics",
      "kind": "lib_belongs_to_specialization",
      "attributes": {
        "weight": 1
      }
    },
    {
      "from": "lib-process:bioinformatics--pipeline-validation",
      "to": "specialization:bioinformatics",
      "kind": "lib_belongs_to_specialization",
      "attributes": {
        "weight": 0.9
      }
    }
  ],
  "incomingEdges": []
}