II.
LibraryProcess overview
Reference · livelib-process:bioinformatics--pipeline-validation
pipeline-validation overview
Analysis Pipeline Validation - Systematic validation of bioinformatics pipelines for accuracy, reproducibility, and clinical use including benchmark testing and performance characterization.
Attributes
displayName
pipeline-validation
description
Analysis Pipeline Validation - Systematic validation of bioinformatics pipelines for accuracy,
reproducibility, and clinical use including benchmark testing and performance characterization.
libraryPath
library/specializations/domains/science/bioinformatics/pipeline-validation.js
specialization
bioinformatics
references
- - GA4GH Benchmarking: https://github.com/ga4gh/benchmarking-tools - Genome in a Bottle: https://www.nist.gov/programs-projects/genome-bottle - precisionFDA: https://precision.fda.gov/ - CAP/CLIA Guidelines: https://www.cap.org/
example
const result = await orchestrate('specializations/domains/science/bioinformatics/pipeline-validation', {
projectName: 'WGS Pipeline Validation',
pipeline: { name: 'WGS-v2', config: '/pipelines/wgs.config' },
referenceData: { type: 'GIAB', sample: 'HG002' },
validationType: 'clinical'
});
usesAgents
- general-purpose
Outgoing edges
lib_applies_to_domain1
- domain:bioinformatics·DomainBioinformatics
lib_belongs_to_specialization2
- specialization:biomedical-informatics·SpecializationBiomedical Informatics
- specialization:bioinformatics·SpecializationBioinformatics
lib_implements_workflow1
- workflow:experiment-design·WorkflowExperiment Design
lib_involves_role2
- role:research-engineer·RoleResearch Engineer
- role:biomedical-engineer·RoleBiomedical Engineer
lib_requires_skill_area3
- skill-area:data-analysis·SkillAreaData Analysis
- skill-area:statistical-analysis·SkillAreaStatistical Analysis
- skill-area:python-data-pipelines·SkillAreaPython Data Pipelines
Incoming edges
None.