{
  "id": "lib-process:bioinformatics--multi-omics-integration",
  "_kind": "LibraryProcess",
  "_file": "generated-library/processes.yaml",
  "_cluster": "generated-library",
  "attributes": {
    "displayName": "multi-omics-integration",
    "description": "Multi-Omics Data Integration - Integrative analysis combining genomics, transcriptomics,\nproteomics, and metabolomics data to provide comprehensive biological insights and systems-level understanding.",
    "libraryPath": "library/specializations/domains/science/bioinformatics/multi-omics-integration.js",
    "specialization": "bioinformatics",
    "references": [
      "- MOFA+: https://biofam.github.io/MOFA2/\n- mixOmics: http://mixomics.org/\n- iCluster: https://www.mskcc.org/departments/epidemiology-biostatistics/biostatistics/icluster\n- PathwayCommons: https://www.pathwaycommons.org/"
    ],
    "example": "const result = await orchestrate('specializations/domains/science/bioinformatics/multi-omics-integration', {\n  projectName: 'Cancer Multi-Omics Study',\n  omicsData: {\n    genomics: '/data/mutations.vcf',\n    transcriptomics: '/data/expression.tsv',\n    proteomics: '/data/proteins.tsv',\n    metabolomics: '/data/metabolites.tsv'\n  },\n  sampleMetadata: { conditions: ['tumor', 'normal'] }\n});",
    "usesAgents": [
      "general-purpose"
    ]
  },
  "outgoingEdges": [
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      "to": "skill-area:data-analysis",
      "kind": "lib_requires_skill_area",
      "attributes": {
        "weight": 1
      }
    },
    {
      "from": "lib-process:bioinformatics--multi-omics-integration",
      "to": "skill-area:statistical-analysis",
      "kind": "lib_requires_skill_area",
      "attributes": {
        "weight": 0.7
      }
    },
    {
      "from": "lib-process:bioinformatics--multi-omics-integration",
      "to": "skill-area:python-data-pipelines",
      "kind": "lib_requires_skill_area",
      "attributes": {
        "weight": 0.5
      }
    },
    {
      "from": "lib-process:bioinformatics--multi-omics-integration",
      "to": "domain:bioinformatics",
      "kind": "lib_applies_to_domain",
      "attributes": {
        "weight": 1
      }
    },
    {
      "from": "lib-process:bioinformatics--multi-omics-integration",
      "to": "role:research-engineer",
      "kind": "lib_involves_role",
      "attributes": {
        "weight": 1
      }
    },
    {
      "from": "lib-process:bioinformatics--multi-omics-integration",
      "to": "role:biomedical-engineer",
      "kind": "lib_involves_role",
      "attributes": {
        "weight": 0.7
      }
    },
    {
      "from": "lib-process:bioinformatics--multi-omics-integration",
      "to": "workflow:experiment-design",
      "kind": "lib_implements_workflow",
      "attributes": {
        "weight": 1
      }
    },
    {
      "from": "lib-process:bioinformatics--multi-omics-integration",
      "to": "specialization:biomedical-informatics",
      "kind": "lib_belongs_to_specialization",
      "attributes": {
        "weight": 1
      }
    },
    {
      "from": "lib-process:bioinformatics--multi-omics-integration",
      "to": "specialization:bioinformatics",
      "kind": "lib_belongs_to_specialization",
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      }
    }
  ],
  "incomingEdges": []
}