II.
LibraryProcess overview
Reference · livelib-process:bioinformatics--crispr-screen-analysis
crispr-screen-analysis overview
CRISPR Screen Analysis - Analyzing pooled CRISPR knockout/activation/inhibition screens for gene essentiality, synthetic lethality, and functional genomics applications.
Attributes
displayName
crispr-screen-analysis
description
CRISPR Screen Analysis - Analyzing pooled CRISPR knockout/activation/inhibition screens
for gene essentiality, synthetic lethality, and functional genomics applications.
libraryPath
library/specializations/domains/science/bioinformatics/crispr-screen-analysis.js
specialization
bioinformatics
references
- - MAGeCK: https://sourceforge.net/p/mageck/wiki/Home/ - BAGEL2: https://github.com/hart-lab/bagel - CRISPRcleanR: https://github.com/francescojm/CRISPRcleanR - CRISPR-ScreenProcessing: https://github.com/mhegde/CRISPR-Analysis - DepMap: https://depmap.org/
example
const result = await orchestrate('specializations/domains/science/bioinformatics/crispr-screen-analysis', {
projectName: 'Drug Resistance Screen',
screenType: 'knockout',
libraryInfo: { name: 'Brunello', guides: 76441 },
sequencingFiles: ['/data/plasmid.fastq', '/data/t0.fastq', '/data/treatment.fastq']
});
usesAgents
- general-purpose
Outgoing edges
lib_applies_to_domain1
- domain:bioinformatics·DomainBioinformatics
lib_belongs_to_specialization2
- specialization:biomedical-informatics·SpecializationBiomedical Informatics
- specialization:bioinformatics·SpecializationBioinformatics
lib_implements_workflow1
- workflow:experiment-design·WorkflowExperiment Design
lib_involves_role2
- role:research-engineer·RoleResearch Engineer
- role:biomedical-engineer·RoleBiomedical Engineer
lib_requires_skill_area3
- skill-area:data-analysis·SkillAreaData Analysis
- skill-area:statistical-analysis·SkillAreaStatistical Analysis
- skill-area:python-data-pipelines·SkillAreaPython Data Pipelines
Incoming edges
None.