{
  "id": "lib-process:bioinformatics--16s-microbiome-analysis",
  "_kind": "LibraryProcess",
  "_file": "generated-library/processes.yaml",
  "_cluster": "generated-library",
  "attributes": {
    "displayName": "16s-microbiome-analysis",
    "description": "16S rRNA Microbiome Analysis - Analysis of 16S rRNA amplicon sequencing data for\nmicrobial community profiling including taxonomic classification, diversity analysis, and\ndifferential abundance testing.",
    "libraryPath": "library/specializations/domains/science/bioinformatics/16s-microbiome-analysis.js",
    "specialization": "bioinformatics",
    "references": [
      "- QIIME2: https://qiime2.org/\n- DADA2: https://benjjneb.github.io/dada2/\n- SILVA Database: https://www.arb-silva.de/\n- PICRUSt2: https://github.com/picrust/picrust2"
    ],
    "example": "const result = await orchestrate('specializations/domains/science/bioinformatics/16s-microbiome-analysis', {\n  projectName: 'Gut Microbiome Study',\n  samples: [{ id: 'sample1', fastq: '/data/sample1.fastq.gz' }],\n  metadata: { condition: ['treatment', 'control'] },\n  region: 'V3-V4'\n});",
    "usesAgents": [
      "general-purpose"
    ]
  },
  "outgoingEdges": [
    {
      "from": "lib-process:bioinformatics--16s-microbiome-analysis",
      "to": "skill-area:data-analysis",
      "kind": "lib_requires_skill_area",
      "attributes": {
        "weight": 1
      }
    },
    {
      "from": "lib-process:bioinformatics--16s-microbiome-analysis",
      "to": "skill-area:statistical-analysis",
      "kind": "lib_requires_skill_area",
      "attributes": {
        "weight": 0.7
      }
    },
    {
      "from": "lib-process:bioinformatics--16s-microbiome-analysis",
      "to": "skill-area:python-data-pipelines",
      "kind": "lib_requires_skill_area",
      "attributes": {
        "weight": 0.5
      }
    },
    {
      "from": "lib-process:bioinformatics--16s-microbiome-analysis",
      "to": "domain:bioinformatics",
      "kind": "lib_applies_to_domain",
      "attributes": {
        "weight": 1
      }
    },
    {
      "from": "lib-process:bioinformatics--16s-microbiome-analysis",
      "to": "role:research-engineer",
      "kind": "lib_involves_role",
      "attributes": {
        "weight": 1
      }
    },
    {
      "from": "lib-process:bioinformatics--16s-microbiome-analysis",
      "to": "role:biomedical-engineer",
      "kind": "lib_involves_role",
      "attributes": {
        "weight": 0.7
      }
    },
    {
      "from": "lib-process:bioinformatics--16s-microbiome-analysis",
      "to": "workflow:experiment-design",
      "kind": "lib_implements_workflow",
      "attributes": {
        "weight": 1
      }
    },
    {
      "from": "lib-process:bioinformatics--16s-microbiome-analysis",
      "to": "specialization:biomedical-informatics",
      "kind": "lib_belongs_to_specialization",
      "attributes": {
        "weight": 1
      }
    },
    {
      "from": "lib-process:bioinformatics--16s-microbiome-analysis",
      "to": "specialization:bioinformatics",
      "kind": "lib_belongs_to_specialization",
      "attributes": {
        "weight": 0.9
      }
    }
  ],
  "incomingEdges": []
}