II.
LibraryProcess overview
Reference · livelib-process:bioinformatics--16s-microbiome-analysis
16s-microbiome-analysis overview
16S rRNA Microbiome Analysis - Analysis of 16S rRNA amplicon sequencing data for microbial community profiling including taxonomic classification, diversity analysis, and differential abundance testing.
Attributes
displayName
16s-microbiome-analysis
description
16S rRNA Microbiome Analysis - Analysis of 16S rRNA amplicon sequencing data for
microbial community profiling including taxonomic classification, diversity analysis, and
differential abundance testing.
libraryPath
library/specializations/domains/science/bioinformatics/16s-microbiome-analysis.js
specialization
bioinformatics
references
- - QIIME2: https://qiime2.org/ - DADA2: https://benjjneb.github.io/dada2/ - SILVA Database: https://www.arb-silva.de/ - PICRUSt2: https://github.com/picrust/picrust2
example
const result = await orchestrate('specializations/domains/science/bioinformatics/16s-microbiome-analysis', {
projectName: 'Gut Microbiome Study',
samples: [{ id: 'sample1', fastq: '/data/sample1.fastq.gz' }],
metadata: { condition: ['treatment', 'control'] },
region: 'V3-V4'
});
usesAgents
- general-purpose
Outgoing edges
lib_applies_to_domain1
- domain:bioinformatics·DomainBioinformatics
lib_belongs_to_specialization2
- specialization:biomedical-informatics·SpecializationBiomedical Informatics
- specialization:bioinformatics·SpecializationBioinformatics
lib_implements_workflow1
- workflow:experiment-design·WorkflowExperiment Design
lib_involves_role2
- role:research-engineer·RoleResearch Engineer
- role:biomedical-engineer·RoleBiomedical Engineer
lib_requires_skill_area3
- skill-area:data-analysis·SkillAreaData Analysis
- skill-area:statistical-analysis·SkillAreaStatistical Analysis
- skill-area:python-data-pipelines·SkillAreaPython Data Pipelines
Incoming edges
None.