{
  "id": "workflow:genomic-data-pipeline-validation",
  "_kind": "Workflow",
  "_file": "workflows/workflows/workflows-thin-domains-fill.yaml",
  "_cluster": "workflows",
  "attributes": {
    "displayName": "Genomic Data Pipeline Validation",
    "workflowKind": "governance",
    "triggerType": "event-driven",
    "typicalCadence": "per-release",
    "complexity": "cross-team",
    "description": "Validates genomic data processing pipelines end-to-end -- verifying\nFASTQ quality filtering against Phred score thresholds, checking\nalignment accuracy against reference genome assemblies\n(GRCh38/T2T-CHM13), benchmarking variant calling sensitivity and\nspecificity on truth-set datasets (e.g., Genome in a Bottle),\nauditing annotation databases for currency and completeness, testing\npipeline reproducibility across compute environments and software\nversions, and confirming output formats meet VCF specification and\ndownstream analysis requirements. Produces validation report with\nconcordance metrics and pipeline certification status. Excludes\npipeline development and wet-lab sample preparation.\n"
  },
  "outgoingEdges": [
    {
      "from": "workflow:genomic-data-pipeline-validation",
      "to": "role:data-scientist",
      "kind": "involves_role",
      "attributes": {}
    },
    {
      "from": "workflow:genomic-data-pipeline-validation",
      "to": "role:test-writer",
      "kind": "involves_role",
      "attributes": {}
    },
    {
      "from": "workflow:genomic-data-pipeline-validation",
      "to": "role:staff-engineer",
      "kind": "involves_role",
      "attributes": {}
    },
    {
      "from": "workflow:genomic-data-pipeline-validation",
      "to": "skill-area:python-data-pipelines",
      "kind": "requires_skill_area",
      "attributes": {}
    },
    {
      "from": "workflow:genomic-data-pipeline-validation",
      "to": "skill-area:data-quality",
      "kind": "requires_skill_area",
      "attributes": {}
    },
    {
      "from": "workflow:genomic-data-pipeline-validation",
      "to": "domain:bioinformatics",
      "kind": "applies_to_domain",
      "attributes": {}
    },
    {
      "from": "workflow:genomic-data-pipeline-validation",
      "to": "domain:scientific-computing",
      "kind": "applies_to_domain",
      "attributes": {}
    },
    {
      "from": "workflow:genomic-data-pipeline-validation",
      "to": "responsibility:data-quality-monitoring",
      "kind": "triggers_responsibility",
      "attributes": {}
    },
    {
      "from": "workflow:genomic-data-pipeline-validation",
      "to": "responsibility:review-architecture-changes",
      "kind": "triggers_responsibility",
      "attributes": {}
    },
    {
      "from": "workflow:genomic-data-pipeline-validation",
      "to": "org-unit:research-engineering",
      "kind": "performed_by_org_unit",
      "attributes": {}
    },
    {
      "from": "workflow:genomic-data-pipeline-validation",
      "to": "org-unit:quality-engineering",
      "kind": "performed_by_org_unit",
      "attributes": {}
    }
  ],
  "incomingEdges": []
}