II.
LibrarySkill overview
Reference · livelib-skill:bioinformatics--star-rnaseq-aligner
star-rnaseq-aligner overview
STAR alignment skill for splice-aware RNA-seq read mapping with comprehensive QC metrics
Attributes
displayName
star-rnaseq-aligner
description
STAR alignment skill for splice-aware RNA-seq read mapping with comprehensive QC metrics
libraryPath
library/specializations/domains/science/bioinformatics/skills/star-rnaseq-aligner/SKILL.md
specialization
bioinformatics
contentSummary
# STAR RNA-seq Aligner Skill
## Purpose
Provide STAR alignment for splice-aware RNA-seq read mapping with comprehensive QC metrics.
## Capabilities
- Splice junction detection
- Two-pass alignment mode
- Chimeric read detection (fusions)
- Gene quantification (--quantMode)
- Custom genom
Outgoing edges
lib_applies_to_domain1
- domain:bioinformatics·DomainBioinformatics
lib_belongs_to_specialization2
- specialization:biomedical-informatics·SpecializationBiomedical Informatics
- specialization:bioinformatics·SpecializationBioinformatics
lib_implements_workflow1
- workflow:experiment-design·WorkflowExperiment Design
lib_involves_role2
- role:research-engineer·RoleResearch Engineer
- role:biomedical-engineer·RoleBiomedical Engineer
lib_requires_skill_area3
- skill-area:graph-algorithms·SkillAreaGraph Algorithms
- skill-area:python-data-pipelines·SkillAreaPython Data Pipelines
- skill-area:data-analysis·SkillAreaData Analysis
Incoming edges
None.