II.
LibrarySkill overview
Reference · livelib-skill:bioinformatics--samtools-bam-processor
samtools-bam-processor overview
BAM/SAM file manipulation skill for sorting, indexing, filtering, and extracting alignment data
Attributes
displayName
samtools-bam-processor
description
BAM/SAM file manipulation skill for sorting, indexing, filtering, and extracting alignment data
libraryPath
library/specializations/domains/science/bioinformatics/skills/samtools-bam-processor/SKILL.md
specialization
bioinformatics
contentSummary
# Samtools BAM Processor Skill
## Purpose
Provide BAM/SAM file manipulation capabilities for sorting, indexing, filtering, and extracting alignment data.
## Capabilities
- BAM sorting and indexing
- Duplicate marking and removal
- Alignment statistics generation
- Region extraction and fi
Outgoing edges
lib_applies_to_domain1
- domain:bioinformatics·DomainBioinformatics
lib_belongs_to_specialization2
- specialization:biomedical-informatics·SpecializationBiomedical Informatics
- specialization:bioinformatics·SpecializationBioinformatics
lib_implements_workflow1
- workflow:experiment-design·WorkflowExperiment Design
lib_involves_role2
- role:research-engineer·RoleResearch Engineer
- role:lab-technician·RoleLab Technician
lib_requires_skill_area3
- skill-area:python-data-pipelines·SkillAreaPython Data Pipelines
- skill-area:data-analysis·SkillAreaData Analysis
- skill-area:graph-algorithms·SkillAreaGraph Algorithms
Incoming edges
None.