II.
LibrarySkill overview
Reference · livelib-skill:bioinformatics--salmon-quantifier
salmon-quantifier overview
Salmon pseudo-alignment skill for fast and accurate transcript quantification
Attributes
displayName
salmon-quantifier
description
Salmon pseudo-alignment skill for fast and accurate transcript quantification
libraryPath
library/specializations/domains/science/bioinformatics/skills/salmon-quantifier/SKILL.md
specialization
bioinformatics
contentSummary
# Salmon Quantifier Skill
## Purpose
Enable Salmon pseudo-alignment for fast and accurate transcript quantification.
## Capabilities
- Selective alignment mode
- GC bias correction
- Mapping rate assessment
- Bootstrap uncertainty estimation
- Multi-mapping resolution
- Decoy-aware inde
Outgoing edges
lib_applies_to_domain1
- domain:bioinformatics·DomainBioinformatics
lib_belongs_to_specialization2
- specialization:biomedical-informatics·SpecializationBiomedical Informatics
- specialization:bioinformatics·SpecializationBioinformatics
lib_implements_workflow1
- workflow:experiment-design·WorkflowExperiment Design
lib_involves_role2
- role:research-engineer·RoleResearch Engineer
- role:biomedical-engineer·RoleBiomedical Engineer
lib_requires_skill_area3
- skill-area:statistical-analysis·SkillAreaStatistical Analysis
- skill-area:python-data-pipelines·SkillAreaPython Data Pipelines
- skill-area:data-analysis·SkillAreaData Analysis
Incoming edges
None.