II.
LibrarySkill overview
Reference · livelib-skill:bioinformatics--kraken2-taxonomic-classifier
kraken2-taxonomic-classifier overview
Kraken2 taxonomic classification skill for rapid metagenomic read assignment
Attributes
displayName
kraken2-taxonomic-classifier
description
Kraken2 taxonomic classification skill for rapid metagenomic read assignment
libraryPath
library/specializations/domains/science/bioinformatics/skills/kraken2-taxonomic-classifier/SKILL.md
specialization
bioinformatics
contentSummary
# Kraken2 Taxonomic Classifier Skill
## Purpose
Provide Kraken2 taxonomic classification for rapid metagenomic read assignment.
## Capabilities
- k-mer based classification
- Custom database creation
- Confidence score filtering
- Bracken abundance estimation
- Multi-sample reporting
-
Outgoing edges
lib_applies_to_domain1
- domain:bioinformatics·DomainBioinformatics
lib_belongs_to_specialization2
- specialization:biomedical-informatics·SpecializationBiomedical Informatics
- specialization:bioinformatics·SpecializationBioinformatics
lib_implements_workflow1
- workflow:experiment-design·WorkflowExperiment Design
lib_involves_role2
- role:research-engineer·RoleResearch Engineer
- role:biomedical-engineer·RoleBiomedical Engineer
lib_requires_skill_area3
- skill-area:graph-algorithms·SkillAreaGraph Algorithms
- skill-area:python-data-pipelines·SkillAreaPython Data Pipelines
- skill-area:data-analysis·SkillAreaData Analysis
Incoming edges
None.