II.
LibrarySkill overview
Reference · livelib-skill:bioinformatics--giab-benchmark-validator
giab-benchmark-validator overview
Genome in a Bottle benchmark validation skill for pipeline accuracy assessment
Attributes
displayName
giab-benchmark-validator
description
Genome in a Bottle benchmark validation skill for pipeline accuracy assessment
libraryPath
library/specializations/domains/science/bioinformatics/skills/giab-benchmark-validator/SKILL.md
specialization
bioinformatics
contentSummary
# GIAB Benchmark Validator Skill
## Purpose
Enable Genome in a Bottle benchmark validation for pipeline accuracy assessment.
## Capabilities
- Truth set comparison
- hap.py/vcfeval execution
- Sensitivity/specificity calculation
- Stratified performance metrics
- Difficult region analysi
Outgoing edges
lib_applies_to_domain1
- domain:bioinformatics·DomainBioinformatics
lib_belongs_to_specialization2
- specialization:biomedical-informatics·SpecializationBiomedical Informatics
- specialization:bioinformatics·SpecializationBioinformatics
lib_implements_workflow1
- workflow:experiment-design·WorkflowExperiment Design
lib_involves_role2
- role:research-engineer·RoleResearch Engineer
- role:biomedical-engineer·RoleBiomedical Engineer
lib_requires_skill_area3
- skill-area:statistical-analysis·SkillAreaStatistical Analysis
- skill-area:data-analysis·SkillAreaData Analysis
- skill-area:python-data-pipelines·SkillAreaPython Data Pipelines
Incoming edges
None.