II.
LibrarySkill overview
Reference · livelib-skill:bioinformatics--gatk-variant-caller
gatk-variant-caller overview
GATK best practices skill for germline and somatic variant calling with joint genotyping
Attributes
displayName
gatk-variant-caller
description
GATK best practices skill for germline and somatic variant calling with joint genotyping
libraryPath
library/specializations/domains/science/bioinformatics/skills/gatk-variant-caller/SKILL.md
specialization
bioinformatics
contentSummary
# GATK Variant Caller Skill
## Purpose
Provide GATK best practices for germline and somatic variant calling with joint genotyping support.
## Capabilities
- HaplotypeCaller execution
- Base quality score recalibration (BQSR)
- Variant quality score recalibration (VQSR)
- Joint genotyping across co
Outgoing edges
lib_applies_to_domain1
- domain:bioinformatics·DomainBioinformatics
lib_belongs_to_specialization2
- specialization:biomedical-informatics·SpecializationBiomedical Informatics
- specialization:bioinformatics·SpecializationBioinformatics
lib_implements_workflow1
- workflow:experiment-design·WorkflowExperiment Design
lib_involves_role2
- role:research-engineer·RoleResearch Engineer
- role:biomedical-engineer·RoleBiomedical Engineer
lib_requires_skill_area3
- skill-area:statistical-analysis·SkillAreaStatistical Analysis
- skill-area:python-data-pipelines·SkillAreaPython Data Pipelines
- skill-area:data-analysis·SkillAreaData Analysis
Incoming edges
None.