{
  "id": "lib-process:bioinformatics--spatial-transcriptomics",
  "_kind": "LibraryProcess",
  "_file": "generated-library/processes.yaml",
  "_cluster": "generated-library",
  "attributes": {
    "displayName": "spatial-transcriptomics",
    "description": "Spatial Transcriptomics Analysis - Analysis of spatially-resolved transcriptomics data\nto understand gene expression patterns in tissue context. Integrates with histological imaging\nfor comprehensive tissue characterization.",
    "libraryPath": "library/specializations/domains/science/bioinformatics/spatial-transcriptomics.js",
    "specialization": "bioinformatics",
    "references": [
      "- Squidpy: https://squidpy.readthedocs.io/\n- SpatialDE: https://github.com/Teichlab/SpatialDE\n- STUtility: https://ludvigla.github.io/STUtility_web_site/\n- Cell2location: https://cell2location.readthedocs.io/"
    ],
    "example": "const result = await orchestrate('specializations/domains/science/bioinformatics/spatial-transcriptomics', {\n  projectName: 'Tumor Microenvironment Study',\n  samples: [{ id: 'sample1', dataPath: '/data/spatial' }],\n  platform: 'Visium',\n  histologyImages: ['/images/HE_sample1.tiff']\n});",
    "usesAgents": [
      "general-purpose"
    ]
  },
  "outgoingEdges": [
    {
      "from": "lib-process:bioinformatics--spatial-transcriptomics",
      "to": "skill-area:data-analysis",
      "kind": "lib_requires_skill_area",
      "attributes": {
        "weight": 1
      }
    },
    {
      "from": "lib-process:bioinformatics--spatial-transcriptomics",
      "to": "skill-area:statistical-analysis",
      "kind": "lib_requires_skill_area",
      "attributes": {
        "weight": 0.7
      }
    },
    {
      "from": "lib-process:bioinformatics--spatial-transcriptomics",
      "to": "skill-area:python-data-pipelines",
      "kind": "lib_requires_skill_area",
      "attributes": {
        "weight": 0.5
      }
    },
    {
      "from": "lib-process:bioinformatics--spatial-transcriptomics",
      "to": "domain:bioinformatics",
      "kind": "lib_applies_to_domain",
      "attributes": {
        "weight": 1
      }
    },
    {
      "from": "lib-process:bioinformatics--spatial-transcriptomics",
      "to": "role:research-engineer",
      "kind": "lib_involves_role",
      "attributes": {
        "weight": 1
      }
    },
    {
      "from": "lib-process:bioinformatics--spatial-transcriptomics",
      "to": "role:biomedical-engineer",
      "kind": "lib_involves_role",
      "attributes": {
        "weight": 0.7
      }
    },
    {
      "from": "lib-process:bioinformatics--spatial-transcriptomics",
      "to": "workflow:experiment-design",
      "kind": "lib_implements_workflow",
      "attributes": {
        "weight": 1
      }
    },
    {
      "from": "lib-process:bioinformatics--spatial-transcriptomics",
      "to": "specialization:biomedical-informatics",
      "kind": "lib_belongs_to_specialization",
      "attributes": {
        "weight": 1
      }
    },
    {
      "from": "lib-process:bioinformatics--spatial-transcriptomics",
      "to": "specialization:bioinformatics",
      "kind": "lib_belongs_to_specialization",
      "attributes": {
        "weight": 0.9
      }
    }
  ],
  "incomingEdges": []
}