II.
LibraryProcess overview
Reference · livelib-process:bioinformatics--rnaseq-differential-expression
rnaseq-differential-expression overview
RNA-seq Differential Expression Analysis - Comprehensive RNA-seq analysis workflow for identifying differentially expressed genes between experimental conditions. Includes normalization, statistical modeling, and pathway enrichment.
Attributes
displayName
rnaseq-differential-expression
description
RNA-seq Differential Expression Analysis - Comprehensive RNA-seq analysis workflow
for identifying differentially expressed genes between experimental conditions. Includes
normalization, statistical modeling, and pathway enrichment.
libraryPath
library/specializations/domains/science/bioinformatics/rnaseq-differential-expression.js
specialization
bioinformatics
references
- - DESeq2: https://bioconductor.org/packages/DESeq2/ - edgeR: https://bioconductor.org/packages/edgeR/ - STAR Aligner: https://github.com/alexdobin/STAR - Salmon: https://combine-lab.github.io/salmon/ - clusterProfiler: https://bioconductor.org/packages/clusterProfiler/
example
const result = await orchestrate('specializations/domains/science/bioinformatics/rnaseq-differential-expression', {
projectName: 'Drug Treatment Study',
samples: [{ id: 'S1', condition: 'treatment' }, { id: 'S2', condition: 'control' }],
conditions: { treatment: 'Drug_A', control: 'Vehicle' },
referenceGenome: 'GRCh38'
});
usesAgents
- general-purpose
Outgoing edges
lib_applies_to_domain1
- domain:bioinformatics·DomainBioinformatics
lib_belongs_to_specialization2
- specialization:biomedical-informatics·SpecializationBiomedical Informatics
- specialization:bioinformatics·SpecializationBioinformatics
lib_implements_workflow1
- workflow:experiment-design·WorkflowExperiment Design
lib_involves_role2
- role:research-engineer·RoleResearch Engineer
- role:biomedical-engineer·RoleBiomedical Engineer
lib_requires_skill_area3
- skill-area:data-analysis·SkillAreaData Analysis
- skill-area:statistical-analysis·SkillAreaStatistical Analysis
- skill-area:python-data-pipelines·SkillAreaPython Data Pipelines
Incoming edges
None.