II.
LibraryProcess overview
Reference · livelib-process:bioinformatics--reproducible-research
reproducible-research overview
Reproducible Research Workflows - Developing portable, reproducible bioinformatics workflows using workflow managers (Nextflow, Snakemake) with containerization and versioning.
Attributes
displayName
reproducible-research
description
Reproducible Research Workflows - Developing portable, reproducible bioinformatics
workflows using workflow managers (Nextflow, Snakemake) with containerization and versioning.
libraryPath
library/specializations/domains/science/bioinformatics/reproducible-research.js
specialization
bioinformatics
references
- - Nextflow: https://www.nextflow.io/ - Snakemake: https://snakemake.readthedocs.io/ - nf-core: https://nf-co.re/ - BioContainers: https://biocontainers.pro/ - Conda/Bioconda: https://bioconda.github.io/
example
const result = await orchestrate('specializations/domains/science/bioinformatics/reproducible-research', {
projectName: 'WGS Reproducible Pipeline',
workflowType: 'nextflow',
tools: ['bwa-mem2', 'gatk4', 'bcftools'],
containerEngine: 'docker'
});
usesAgents
- general-purpose
Outgoing edges
lib_applies_to_domain1
- domain:bioinformatics·DomainBioinformatics
lib_belongs_to_specialization2
- specialization:biomedical-informatics·SpecializationBiomedical Informatics
- specialization:bioinformatics·SpecializationBioinformatics
lib_implements_workflow1
- workflow:experiment-design·WorkflowExperiment Design
lib_involves_role2
- role:research-engineer·RoleResearch Engineer
- role:biomedical-engineer·RoleBiomedical Engineer
lib_requires_skill_area3
- skill-area:data-analysis·SkillAreaData Analysis
- skill-area:statistical-analysis·SkillAreaStatistical Analysis
- skill-area:python-data-pipelines·SkillAreaPython Data Pipelines
Incoming edges
None.