II.
LibraryProcess overview
Reference · livelib-process:bioinformatics--long-read-analysis
long-read-analysis overview
Long-Read Sequencing Analysis - Processing and analysis of Oxford Nanopore and PacBio long-read sequencing data for genome assembly, structural variant detection, and methylation analysis.
Attributes
displayName
long-read-analysis
description
Long-Read Sequencing Analysis - Processing and analysis of Oxford Nanopore and PacBio
long-read sequencing data for genome assembly, structural variant detection, and methylation analysis.
libraryPath
library/specializations/domains/science/bioinformatics/long-read-analysis.js
specialization
bioinformatics
references
- - Minimap2: https://github.com/lh3/minimap2 - Flye: https://github.com/fenderglass/Flye - Medaka: https://github.com/nanoporetech/medaka - PEPPER-Margin-DeepVariant: https://github.com/kishwarshafin/pepper - Sniffles: https://github.com/fritzsedlazeck/Sniffles - Megalodon: https://github.com/nanoporetech/megalodon
example
const result = await orchestrate('specializations/domains/science/bioinformatics/long-read-analysis', {
projectName: 'Long-Read Genome Assembly',
platform: 'nanopore',
dataFiles: ['/data/reads.fastq.gz'],
analysisType: 'assembly'
});
usesAgents
- general-purpose
Outgoing edges
lib_applies_to_domain1
- domain:bioinformatics·DomainBioinformatics
lib_belongs_to_specialization2
- specialization:biomedical-informatics·SpecializationBiomedical Informatics
- specialization:bioinformatics·SpecializationBioinformatics
lib_implements_workflow1
- workflow:experiment-design·WorkflowExperiment Design
lib_involves_role2
- role:research-engineer·RoleResearch Engineer
- role:biomedical-engineer·RoleBiomedical Engineer
lib_requires_skill_area3
- skill-area:data-analysis·SkillAreaData Analysis
- skill-area:statistical-analysis·SkillAreaStatistical Analysis
- skill-area:python-data-pipelines·SkillAreaPython Data Pipelines
Incoming edges
None.